PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_637EBDDC6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 362aa    MW: 42161.4 Da    PI: 6.5902
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_637EBDDC6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.93.9e-1961146191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY++YAk+ GF v ++++++  ++ + +  t+ Cs++gk++ ++k+   + +++++tr++C ak++ +++ ++k+++t++ l+HnH+
  Traes_2DS_637EBDDC6.1  61 SFYKDYAKKEGFGVIRRTTRHG-EDSKLVYFTLACSRQGKAQYSSKN---SFKPNPSTRMQCPAKVNSSRR-EEKFCITSITLDHNHA 143
                            5***************999998.6666999*************9999...999**************9999.9**************9 PP

                   FAR1  89 lap 91 
                            ++p
  Traes_2DS_637EBDDC6.1 144 ISP 146
                            875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1661146IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MESDLIFGEV ADKNRSFEDA DEDAFIFEEI RDSSDDQQVE QIMMLHPKEG MTFDSEDAAV  60
SFYKDYAKKE GFGVIRRTTR HGEDSKLVYF TLACSRQGKA QYSSKNSFKP NPSTRMQCPA  120
KVNSSRREEK FCITSITLDH NHAISPSKAR FLRCHKKLDL HAKRRLELND QAGIRLNKKI  180
GSLIMEAGGY GNLEFGEKEC RNYLQETRRL KLGAGDAHVV YQYFLRMQSK DPDFFHLMDV  240
DKAWVEMINK YDLHENEWLA GLYAEKRWVP AYVKDTFWAG MSSTQRSESV NAFFDGYVHA  300
RTTLKQFVEQ YENALRDKVE KETKAVSKSF QEEIPCITHF DFEKQFQAAY TNAKFQEFQE  360
QL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.11e-120PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLW5C5J10.0W5C5J1_WHEAT; Uncharacterized protein
STRINGBRADI2G12690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1605657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-29FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]